ZNF92.H13RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF92.H13RSNP.0.P.D
Gene (human)	ZNF92 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	ATGTCCAGGCAGAAGTYTGCT
GC content	49.12%
Information content (bits; total / per base)	32.247 / 1.536
Data sources	ChIP-Seq
Aligned words	974
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.993	0.994	0.994	0.995	0.901	0.901	472.515	504.284

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.199
HGNC	HGNC:13168
MGI
EntrezGene (human)	GeneID:168374 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF92_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q03936 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF92.H13RSNP.0.P.D.pcm
PWM	ZNF92.H13RSNP.0.P.D.pwm
PFM	ZNF92.H13RSNP.0.P.D.pfm
Threshold to P-value map	ZNF92.H13RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZNF92.H13RSNP.0.P.D_jaspar_format.txt
MEME format	ZNF92.H13RSNP.0.P.D_meme_format.meme
Transfac format	ZNF92.H13RSNP.0.P.D_transfac_format.txt
Homer format	ZNF92.H13RSNP.0.P.D_homer_format_0.001.txt ZNF92.H13RSNP.0.P.D_homer_format_0.0005.txt ZNF92.H13RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	902.0	12.0	53.0	7.0
02	15.0	17.0	7.0	935.0
03	80.0	2.0	883.0	9.0
04	7.0	172.0	4.0	791.0
05	11.0	914.0	3.0	46.0
06	19.0	910.0	5.0	40.0
07	940.0	4.0	10.0	20.0
08	50.0	2.0	907.0	15.0
09	45.0	5.0	913.0	11.0
10	22.0	905.0	6.0	41.0
11	960.0	3.0	7.0	4.0
12	65.0	4.0	892.0	13.0
13	967.0	2.0	5.0	0.0
14	913.0	8.0	44.0	9.0
15	17.0	4.0	926.0	27.0
16	14.0	102.0	9.0	849.0
17	18.0	392.0	46.0	518.0
18	8.0	14.0	22.0	930.0
19	54.0	14.0	874.0	32.0
20	15.0	893.0	12.0	54.0
21	21.0	26.0	13.0	914.0

PFM

	A	C	G	T
01	0.926	0.012	0.054	0.007
02	0.015	0.017	0.007	0.96
03	0.082	0.002	0.907	0.009
04	0.007	0.177	0.004	0.812
05	0.011	0.938	0.003	0.047
06	0.02	0.934	0.005	0.041
07	0.965	0.004	0.01	0.021
08	0.051	0.002	0.931	0.015
09	0.046	0.005	0.937	0.011
10	0.023	0.929	0.006	0.042
11	0.986	0.003	0.007	0.004
12	0.067	0.004	0.916	0.013
13	0.993	0.002	0.005	0.0
14	0.937	0.008	0.045	0.009
15	0.017	0.004	0.951	0.028
16	0.014	0.105	0.009	0.872
17	0.018	0.402	0.047	0.532
18	0.008	0.014	0.023	0.955
19	0.055	0.014	0.897	0.033
20	0.015	0.917	0.012	0.055
21	0.022	0.027	0.013	0.938

PWM

	A	C	G	T
01	1.304	-2.883	-1.5	-3.336
02	-2.686	-2.573	-3.336	1.34
03	-1.099	-4.188	1.283	-3.13
04	-3.336	-0.345	-3.758	1.173
05	-2.959	1.318	-3.95	-1.637
06	-2.471	1.313	-3.597	-1.771
07	1.346	-3.758	-3.041	-2.424
08	-1.556	-4.188	1.31	-2.686
09	-1.658	-3.597	1.316	-2.959
10	-2.336	1.308	-3.458	-1.747
11	1.367	-3.95	-3.336	-3.758
12	-1.302	-3.758	1.293	-2.813
13	1.374	-4.188	-3.597	-4.96
14	1.316	-3.228	-1.68	-3.13
15	-2.573	-3.758	1.331	-2.145
16	-2.747	-0.86	-3.13	1.244
17	-2.521	0.473	-1.637	0.751
18	-3.228	-2.747	-2.336	1.335
19	-1.482	-2.747	1.273	-1.984
20	-2.686	1.294	-2.883	-1.482
21	-2.379	-2.18	-2.813	1.318

Standard thresholds

P-value	Threshold
0.001	-7.51674
0.0005	-5.67254
0.0001	-1.70844