ZSCAN12.H13RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZSCAN12.H13RSNP.0.P.D
Gene (human)	ZSCAN12 (GeneCards)
Gene synonyms (human)	KIAA0426, ZNF305, ZNF96
Gene (mouse)	Zscan12
Gene synonyms (mouse)	Zfp96, Znf96
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	vbvbTYYYCWMMSYbbbbbSY
GC content	53.92%
Information content (bits; total / per base)	11.207 / 0.534
Data sources	ChIP-Seq
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (3)	0.743	0.762	0.675	0.704	0.742	0.759	16.18	67.119

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.120
HGNC	HGNC:13172
MGI	MGI:1099444
EntrezGene (human)
EntrezGene (mouse)	GeneID:22758 (SSTAR profile)
UniProt ID (human)	ZSC12_HUMAN
UniProt ID (mouse)	ZSC12_MOUSE
UniProt AC (human)	O43309 (TFClass)
UniProt AC (mouse)	Q9Z1D7 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZSCAN12.H13RSNP.0.P.D.pcm
PWM	ZSCAN12.H13RSNP.0.P.D.pwm
PFM	ZSCAN12.H13RSNP.0.P.D.pfm
Threshold to P-value map	ZSCAN12.H13RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZSCAN12.H13RSNP.0.P.D_jaspar_format.txt
MEME format	ZSCAN12.H13RSNP.0.P.D_meme_format.meme
Transfac format	ZSCAN12.H13RSNP.0.P.D_transfac_format.txt
Homer format	ZSCAN12.H13RSNP.0.P.D_homer_format_0.001.txt ZSCAN12.H13RSNP.0.P.D_homer_format_0.0005.txt ZSCAN12.H13RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	121.0	92.0	229.0	58.0
02	49.0	180.0	145.0	126.0
03	83.0	111.0	227.0	79.0
04	34.0	60.0	195.0	211.0
05	3.0	21.0	25.0	451.0
06	5.0	86.0	30.0	379.0
07	13.0	397.0	31.0	59.0
08	18.0	182.0	22.0	278.0
09	12.0	460.0	20.0	8.0
10	378.0	43.0	26.0	53.0
11	303.0	99.0	83.0	15.0
12	334.0	72.0	40.0	54.0
13	26.0	253.0	193.0	28.0
14	36.0	89.0	49.0	326.0
15	60.0	126.0	236.0	78.0
16	56.0	86.0	170.0	188.0
17	40.0	117.0	265.0	78.0
18	59.0	124.0	116.0	201.0
19	54.0	114.0	103.0	229.0
20	37.0	323.0	78.0	62.0
21	52.0	312.0	32.0	104.0

PFM

	A	C	G	T
01	0.242	0.184	0.458	0.116
02	0.098	0.36	0.29	0.252
03	0.166	0.222	0.454	0.158
04	0.068	0.12	0.39	0.422
05	0.006	0.042	0.05	0.902
06	0.01	0.172	0.06	0.758
07	0.026	0.794	0.062	0.118
08	0.036	0.364	0.044	0.556
09	0.024	0.92	0.04	0.016
10	0.756	0.086	0.052	0.106
11	0.606	0.198	0.166	0.03
12	0.668	0.144	0.08	0.108
13	0.052	0.506	0.386	0.056
14	0.072	0.178	0.098	0.652
15	0.12	0.252	0.472	0.156
16	0.112	0.172	0.34	0.376
17	0.08	0.234	0.53	0.156
18	0.118	0.248	0.232	0.402
19	0.108	0.228	0.206	0.458
20	0.074	0.646	0.156	0.124
21	0.104	0.624	0.064	0.208

PWM

	A	C	G	T
01	-0.032	-0.302	0.6	-0.754
02	-0.918	0.361	0.147	0.008
03	-0.403	-0.117	0.591	-0.452
04	-1.27	-0.721	0.44	0.519
05	-3.325	-1.725	-1.561	1.274
06	-2.961	-0.368	-1.389	1.101
07	-2.163	1.147	-1.358	-0.737
08	-1.868	0.372	-1.681	0.793
09	-2.234	1.294	-1.77	-2.584
10	1.098	-1.044	-1.525	-0.841
11	0.878	-0.23	-0.403	-2.034
12	0.975	-0.543	-1.114	-0.823
13	-1.525	0.699	0.43	-1.454
14	-1.215	-0.335	-0.918	0.951
15	-0.721	0.008	0.63	-0.464
16	-0.788	-0.368	0.304	0.404
17	-1.114	-0.065	0.745	-0.464
18	-0.737	-0.008	-0.074	0.47
19	-0.823	-0.091	-0.191	0.6
20	-1.189	0.942	-0.464	-0.689
21	-0.86	0.907	-1.328	-0.181

Standard thresholds

P-value	Threshold
0.001	4.47811
0.0005	5.31426
0.0001	7.07466