ZXDA.H13RSNP.0.PSI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZXDA.H13RSNP.0.PSI.D
Gene (human)	ZXDA (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	11
Consensus	nSCAGGGGCnv
GC content	76.84%
Information content (bits; total / per base)	12.176 / 1.107
Data sources	ChIP-Seq + HT-SELEX + SMiLe-Seq
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (5)	0.801	0.85	0.692	0.762	0.694	0.729	47.886	85.921

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
IVT, 1 experiments	median	0.593	0.57	0.548	0.541	0.52	0.524
IVT, 1 experiments	best	0.593	0.57	0.548	0.541	0.52	0.524

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.728	0.698	0.632	0.621	0.571	0.574
Overall, 1 experiments	best	0.728	0.698	0.632	0.621	0.571	0.574

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZXD {2.3.3.46} (TFClass)
TFClass ID	TFClass: 2.3.3.46.1
HGNC	HGNC:13198
MGI
EntrezGene (human)	GeneID:7789 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZXDA_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P98168 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	no

ChIP-Seq	3 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 1 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZXDA.H13RSNP.0.PSI.D.pcm
PWM	ZXDA.H13RSNP.0.PSI.D.pwm
PFM	ZXDA.H13RSNP.0.PSI.D.pfm
Threshold to P-value map	ZXDA.H13RSNP.0.PSI.D.thr
Motif in other formats
JASPAR format	ZXDA.H13RSNP.0.PSI.D_jaspar_format.txt
MEME format	ZXDA.H13RSNP.0.PSI.D_meme_format.meme
Transfac format	ZXDA.H13RSNP.0.PSI.D_transfac_format.txt
Homer format	ZXDA.H13RSNP.0.PSI.D_homer_format_0.001.txt ZXDA.H13RSNP.0.PSI.D_homer_format_0.0005.txt ZXDA.H13RSNP.0.PSI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	78.0	166.0	108.0	148.0
02	29.0	118.0	340.0	13.0
03	18.0	465.0	15.0	2.0
04	491.0	2.0	3.0	4.0
05	8.0	8.0	484.0	0.0
06	5.0	7.0	484.0	4.0
07	11.0	15.0	472.0	2.0
08	13.0	22.0	454.0	11.0
09	27.0	416.0	12.0	45.0
10	93.0	104.0	151.0	152.0
11	63.0	117.0	263.0	57.0

PFM

	A	C	G	T
01	0.156	0.332	0.216	0.296
02	0.058	0.236	0.68	0.026
03	0.036	0.93	0.03	0.004
04	0.982	0.004	0.006	0.008
05	0.016	0.016	0.968	0.0
06	0.01	0.014	0.968	0.008
07	0.022	0.03	0.944	0.004
08	0.026	0.044	0.908	0.022
09	0.054	0.832	0.024	0.09
10	0.186	0.208	0.302	0.304
11	0.126	0.234	0.526	0.114

PWM

	A	C	G	T
01	-0.464	0.281	-0.144	0.167
02	-1.421	-0.057	0.993	-2.163
03	-1.868	1.305	-2.034	-3.573
04	1.359	-3.573	-3.325	-3.126
05	-2.584	-2.584	1.345	-4.4
06	-2.961	-2.694	1.345	-3.126
07	-2.311	-2.034	1.32	-3.573
08	-2.163	-1.681	1.281	-2.311
09	-1.489	1.194	-2.234	-1.0
10	-0.291	-0.181	0.187	0.193
11	-0.673	-0.065	0.737	-0.771

Standard thresholds

P-value	Threshold
0.001	4.049205
0.0005	5.125825
0.0001	7.14702