| Motif | ZXDB.H13INVITRO.0.PI.A |
| Gene (human) | ZXDB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Zxdb |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZXDB.H13INVITRO.0.PI.A |
| Gene (human) | ZXDB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Zxdb |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | nbMAGGGGbn |
| GC content | 68.29% |
| Information content (bits; total / per base) | 10.7 / 1.07 |
| Data sources | ChIP-Seq + SMiLe-Seq |
| Aligned words | 5896 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.787 | 0.8 | 0.68 | 0.687 | 0.599 | 0.621 | 32.011 | 46.276 |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.866 | 0.833 | 0.746 | 0.726 | 0.646 | 0.646 |
| best | 0.876 | 0.841 | 0.757 | 0.735 | 0.65 | 0.652 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZXD {2.3.3.46} (TFClass) |
| TFClass ID | TFClass: 2.3.3.46.2 |
| HGNC | HGNC:13199 |
| MGI | MGI:3694898 |
| EntrezGene (human) | GeneID:158586 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:668166 (SSTAR profile) |
| UniProt ID (human) | ZXDB_HUMAN |
| UniProt ID (mouse) | ZXDB_MOUSE |
| UniProt AC (human) | P98169 (TFClass) |
| UniProt AC (mouse) | A2CE44 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 0 |
| PCM | ZXDB.H13INVITRO.0.PI.A.pcm |
| PWM | ZXDB.H13INVITRO.0.PI.A.pwm |
| PFM | ZXDB.H13INVITRO.0.PI.A.pfm |
| Threshold to P-value map | ZXDB.H13INVITRO.0.PI.A.thr |
| Motif in other formats | |
| JASPAR format | ZXDB.H13INVITRO.0.PI.A_jaspar_format.txt |
| MEME format | ZXDB.H13INVITRO.0.PI.A_meme_format.meme |
| Transfac format | ZXDB.H13INVITRO.0.PI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1446.0 | 1171.0 | 1255.0 | 2024.0 |
| 02 | 918.25 | 1033.25 | 2735.25 | 1209.25 |
| 03 | 1080.0 | 4158.0 | 214.0 | 444.0 |
| 04 | 5896.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 281.0 | 5615.0 | 0.0 |
| 06 | 0.0 | 0.0 | 5896.0 | 0.0 |
| 07 | 0.0 | 0.0 | 5896.0 | 0.0 |
| 08 | 86.0 | 21.0 | 5637.0 | 152.0 |
| 09 | 336.75 | 2811.75 | 816.75 | 1930.75 |
| 10 | 1230.75 | 1275.75 | 1448.75 | 1940.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.245 | 0.199 | 0.213 | 0.343 |
| 02 | 0.156 | 0.175 | 0.464 | 0.205 |
| 03 | 0.183 | 0.705 | 0.036 | 0.075 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.048 | 0.952 | 0.0 |
| 06 | 0.0 | 0.0 | 1.0 | 0.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.015 | 0.004 | 0.956 | 0.026 |
| 09 | 0.057 | 0.477 | 0.139 | 0.327 |
| 10 | 0.209 | 0.216 | 0.246 | 0.329 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.019 | -0.23 | -0.161 | 0.317 |
| 02 | -0.472 | -0.355 | 0.618 | -0.198 |
| 03 | -0.31 | 1.036 | -1.921 | -1.197 |
| 04 | 1.385 | -6.522 | -6.522 | -6.522 |
| 05 | -6.522 | -1.651 | 1.336 | -6.522 |
| 06 | -6.522 | -6.522 | 1.385 | -6.522 |
| 07 | -6.522 | -6.522 | 1.385 | -6.522 |
| 08 | -2.818 | -4.154 | 1.34 | -2.259 |
| 09 | -1.471 | 0.645 | -0.589 | 0.27 |
| 10 | -0.18 | -0.144 | -0.017 | 0.275 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.55088 |
| 0.0005 | 5.78619 |
| 0.0001 | 7.834675 |