| Motif | ZXDB.H13INVIVO.0.PI.A |
| Gene (human) | ZXDB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Zxdb |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZXDB.H13INVIVO.0.PI.A |
| Gene (human) | ZXDB (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Zxdb |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 9 |
| Consensus | SCAGGGGCn |
| GC content | 79.6% |
| Information content (bits; total / per base) | 11.732 / 1.304 |
| Data sources | ChIP-Seq + SMiLe-Seq |
| Aligned words | 500 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.807 | 0.812 | 0.697 | 0.704 | 0.631 | 0.654 | 38.529 | 52.337 |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.845 | 0.81 | 0.706 | 0.695 | 0.607 | 0.619 |
| best | 0.85 | 0.811 | 0.713 | 0.698 | 0.612 | 0.622 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZXD {2.3.3.46} (TFClass) |
| TFClass ID | TFClass: 2.3.3.46.2 |
| HGNC | HGNC:13199 |
| MGI | MGI:3694898 |
| EntrezGene (human) | GeneID:158586 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:668166 (SSTAR profile) |
| UniProt ID (human) | ZXDB_HUMAN |
| UniProt ID (mouse) | ZXDB_MOUSE |
| UniProt AC (human) | P98169 (TFClass) |
| UniProt AC (mouse) | A2CE44 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 0 |
| PCM | ZXDB.H13INVIVO.0.PI.A.pcm |
| PWM | ZXDB.H13INVIVO.0.PI.A.pwm |
| PFM | ZXDB.H13INVIVO.0.PI.A.pfm |
| Threshold to P-value map | ZXDB.H13INVIVO.0.PI.A.thr |
| Motif in other formats | |
| JASPAR format | ZXDB.H13INVIVO.0.PI.A_jaspar_format.txt |
| MEME format | ZXDB.H13INVIVO.0.PI.A_meme_format.meme |
| Transfac format | ZXDB.H13INVIVO.0.PI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 25.0 | 118.0 | 343.0 | 14.0 |
| 02 | 15.0 | 450.0 | 31.0 | 4.0 |
| 03 | 489.0 | 4.0 | 3.0 | 4.0 |
| 04 | 15.0 | 13.0 | 471.0 | 1.0 |
| 05 | 8.0 | 6.0 | 483.0 | 3.0 |
| 06 | 20.0 | 15.0 | 460.0 | 5.0 |
| 07 | 15.0 | 8.0 | 475.0 | 2.0 |
| 08 | 17.0 | 423.0 | 6.0 | 54.0 |
| 09 | 84.0 | 107.0 | 166.0 | 143.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.05 | 0.236 | 0.686 | 0.028 |
| 02 | 0.03 | 0.9 | 0.062 | 0.008 |
| 03 | 0.978 | 0.008 | 0.006 | 0.008 |
| 04 | 0.03 | 0.026 | 0.942 | 0.002 |
| 05 | 0.016 | 0.012 | 0.966 | 0.006 |
| 06 | 0.04 | 0.03 | 0.92 | 0.01 |
| 07 | 0.03 | 0.016 | 0.95 | 0.004 |
| 08 | 0.034 | 0.846 | 0.012 | 0.108 |
| 09 | 0.168 | 0.214 | 0.332 | 0.286 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.561 | -0.057 | 1.002 | -2.096 |
| 02 | -2.034 | 1.272 | -1.358 | -3.126 |
| 03 | 1.355 | -3.126 | -3.325 | -3.126 |
| 04 | -2.034 | -2.163 | 1.317 | -3.903 |
| 05 | -2.584 | -2.819 | 1.343 | -3.325 |
| 06 | -1.77 | -2.034 | 1.294 | -2.961 |
| 07 | -2.034 | -2.584 | 1.326 | -3.573 |
| 08 | -1.92 | 1.21 | -2.819 | -0.823 |
| 09 | -0.392 | -0.153 | 0.281 | 0.133 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.10415 |
| 0.0005 | 5.30572 |
| 0.0001 | 7.11262 |