ZXDC.H13INVITRO.0.PI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZXDC.H13INVITRO.0.PI.A
Gene (human)	ZXDC (GeneCards)
Gene synonyms (human)	ZXDL
Gene (mouse)	Zxdc
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	14
Consensus	nddhRACCCCGKdn
GC content	59.23%
Information content (bits; total / per base)	12.757 / 0.911
Data sources	ChIP-Seq + SMiLe-Seq
Aligned words	1814
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (5)	0.749	0.757	0.59	0.613	0.547	0.566	10.42	18.854

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.791	0.77	0.691	0.677	0.616	0.615
Overall, 2 experiments	best	0.895	0.871	0.769	0.753	0.655	0.662

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZXD {2.3.3.46} (TFClass)
TFClass ID	TFClass: 2.3.3.46.3
HGNC	HGNC:28160
MGI	MGI:1933108
EntrezGene (human)	GeneID:79364 (SSTAR profile)
EntrezGene (mouse)	GeneID:80292 (SSTAR profile)
UniProt ID (human)	ZXDC_HUMAN
UniProt ID (mouse)	ZXDC_MOUSE
UniProt AC (human)	Q2QGD7 (TFClass)
UniProt AC (mouse)	Q8C8V1 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	2
PBM	0

PCM	ZXDC.H13INVITRO.0.PI.A.pcm
PWM	ZXDC.H13INVITRO.0.PI.A.pwm
PFM	ZXDC.H13INVITRO.0.PI.A.pfm
Threshold to P-value map	ZXDC.H13INVITRO.0.PI.A.thr
Motif in other formats
JASPAR format	ZXDC.H13INVITRO.0.PI.A_jaspar_format.txt
MEME format	ZXDC.H13INVITRO.0.PI.A_meme_format.meme
Transfac format	ZXDC.H13INVITRO.0.PI.A_transfac_format.txt
Homer format	ZXDC.H13INVITRO.0.PI.A_homer_format_0.001.txt ZXDC.H13INVITRO.0.PI.A_homer_format_0.0005.txt ZXDC.H13INVITRO.0.PI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	521.0	435.0	511.0	347.0
02	364.0	149.0	955.0	346.0
03	214.0	194.0	1080.0	326.0
04	1095.0	281.0	205.0	233.0
05	1154.0	70.0	542.0	48.0
06	1562.0	47.0	173.0	32.0
07	80.0	1713.0	10.0	11.0
08	0.0	1814.0	0.0	0.0
09	0.0	1814.0	0.0	0.0
10	0.0	1757.0	1.0	56.0
11	63.0	11.0	1401.0	339.0
12	72.0	141.0	146.0	1455.0
13	797.0	236.0	431.0	350.0
14	323.0	525.0	399.0	567.0

PFM

	A	C	G	T
01	0.287	0.24	0.282	0.191
02	0.201	0.082	0.526	0.191
03	0.118	0.107	0.595	0.18
04	0.604	0.155	0.113	0.128
05	0.636	0.039	0.299	0.026
06	0.861	0.026	0.095	0.018
07	0.044	0.944	0.006	0.006
08	0.0	1.0	0.0	0.0
09	0.0	1.0	0.0	0.0
10	0.0	0.969	0.001	0.031
11	0.035	0.006	0.772	0.187
12	0.04	0.078	0.08	0.802
13	0.439	0.13	0.238	0.193
14	0.178	0.289	0.22	0.313

PWM

	A	C	G	T
01	0.138	-0.041	0.119	-0.266
02	-0.219	-1.105	0.743	-0.269
03	-0.746	-0.844	0.865	-0.328
04	0.879	-0.476	-0.789	-0.662
05	0.931	-1.846	0.178	-2.212
06	1.234	-2.232	-0.957	-2.598
07	-1.716	1.326	-3.647	-3.566
08	-5.492	1.383	-5.492	-5.492
09	-5.492	1.383	-5.492	-5.492
10	-5.492	1.351	-5.065	-2.063
11	-1.949	-3.566	1.125	-0.29
12	-1.819	-1.159	-1.125	1.163
13	0.562	-0.649	-0.051	-0.258
14	-0.338	0.146	-0.127	0.223

Standard thresholds

P-value	Threshold
0.001	3.75641
0.0005	4.92036
0.0001	7.18996