ZXDC.H13INVIVO.0.PI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZXDC.H13INVIVO.0.PI.A
Gene (human)	ZXDC (GeneCards)
Gene synonyms (human)	ZXDL
Gene (mouse)	Zxdc
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	10
Consensus	nGCCCCTGSn
GC content	76.27%
Information content (bits; total / per base)	11.051 / 1.105
Data sources	ChIP-Seq + SMiLe-Seq
Aligned words	1000
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (5)	0.786	0.81	0.653	0.693	0.598	0.63	30.06	47.495

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.672	0.638	0.61	0.592	0.571	0.562
Overall, 2 experiments	best	0.781	0.742	0.677	0.657	0.601	0.6

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZXD {2.3.3.46} (TFClass)
TFClass ID	TFClass: 2.3.3.46.3
HGNC	HGNC:28160
MGI	MGI:1933108
EntrezGene (human)	GeneID:79364 (SSTAR profile)
EntrezGene (mouse)	GeneID:80292 (SSTAR profile)
UniProt ID (human)	ZXDC_HUMAN
UniProt ID (mouse)	ZXDC_MOUSE
UniProt AC (human)	Q2QGD7 (TFClass)
UniProt AC (mouse)	Q8C8V1 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	2
PBM	0

PCM	ZXDC.H13INVIVO.0.PI.A.pcm
PWM	ZXDC.H13INVIVO.0.PI.A.pwm
PFM	ZXDC.H13INVIVO.0.PI.A.pfm
Threshold to P-value map	ZXDC.H13INVIVO.0.PI.A.thr
Motif in other formats
JASPAR format	ZXDC.H13INVIVO.0.PI.A_jaspar_format.txt
MEME format	ZXDC.H13INVIVO.0.PI.A_meme_format.meme
Transfac format	ZXDC.H13INVIVO.0.PI.A_transfac_format.txt
Homer format	ZXDC.H13INVIVO.0.PI.A_homer_format_0.001.txt ZXDC.H13INVIVO.0.PI.A_homer_format_0.0005.txt ZXDC.H13INVIVO.0.PI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	333.0	265.0	235.0	167.0
02	103.0	37.0	834.0	26.0
03	37.0	863.0	62.0	38.0
04	16.0	943.0	16.0	25.0
05	14.0	941.0	12.0	33.0
06	7.0	946.0	31.0	16.0
07	25.0	9.0	5.0	961.0
08	4.0	54.0	916.0	26.0
09	48.0	628.0	259.0	65.0
10	282.0	297.0	274.0	147.0

PFM

	A	C	G	T
01	0.333	0.265	0.235	0.167
02	0.103	0.037	0.834	0.026
03	0.037	0.863	0.062	0.038
04	0.016	0.943	0.016	0.025
05	0.014	0.941	0.012	0.033
06	0.007	0.946	0.031	0.016
07	0.025	0.009	0.005	0.961
08	0.004	0.054	0.916	0.026
09	0.048	0.628	0.259	0.065
10	0.282	0.297	0.274	0.147

PWM

	A	C	G	T
01	0.285	0.058	-0.061	-0.4
02	-0.877	-1.872	1.2	-2.206
03	-1.872	1.234	-1.374	-1.846
04	-2.653	1.323	-2.653	-2.243
05	-2.773	1.32	-2.909	-1.981
06	-3.362	1.326	-2.04	-2.653
07	-2.243	-3.156	-3.622	1.341
08	-3.783	-1.508	1.294	-2.206
09	-1.622	0.917	0.035	-1.328
10	0.12	0.171	0.091	-0.526

Standard thresholds

P-value	Threshold
0.001	4.335435
0.0005	5.42814
0.0001	7.142645